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Tax Strategies for Self-Employed Physicians: Deductions and Credits You Should Know

May 20, 2024 by Chuck Krugh, CFP

Tax dates and stethoscope for self-employed physician deductions

Story at-a-glance

  • Self-employment tax is steep—but deductible – You pay 15.3% in self-employment tax, but can deduct half to lower your taxable income.
  • Home office, health premiums, and business expenses are major deductions – You can write off office space, insurance, supplies, CE, and marketing.
  • Retirement plans reduce taxes now and build wealth later – Use SEP IRA, Solo 401(k), or SIMPLE IRA to shelter up to $73,500/year in retirement savings.
  • QBI deduction could save you 20% – If you qualify under IRS income thresholds, you can deduct up to 20% of business income.
  • Tracking matters most – Keep detailed records of vehicle use, meals, travel, and depreciation to fully claim deductions and avoid IRS issues.

As a self-employed physician, managing your taxes effectively is crucial for maintaining financial health and optimizing your earnings. Unlike salaried employees, you are responsible for both the employer and employee portions of taxes, which can be complex and time-consuming. Understanding the deductions and credits available to you can significantly reduce your tax burden. Here are key tax strategies every self-employed physician should know.

1. Understand Self-Employment Tax

Don't Forget Quarterly Estimated Taxes

Unlike employed physicians, taxes are not withheld from your 1099 income. To avoid IRS underpayment penalties, you must make estimated payments by these deadlines:

  • Q1 (Jan-Mar):
    Due April 15
  • Q2 (Apr-May):
    Due June 15
  • Q3 (Jun-Aug):
    Due Sept 15
  • Q4 (Sep-Dec):
    Due Jan 15

Self-employed individuals must pay self-employment tax, which covers Social Security and Medicare. For 2024, the self-employment tax rate is 15.3% on net earnings. You can, however, deduct the employer-equivalent portion (7.65%) from your taxable income. Keeping accurate records of your income and expenses is essential for calculating this tax correctly.

2. Home Office Deduction

If you use part of your home exclusively and regularly for your medical practice, you may qualify for the home office deduction. The simplified method allows you to deduct $5 per square foot of your home office, up to a maximum of 300 square feet. Alternatively, you can use the regular method, which requires detailed tracking of actual expenses related to the portion of your home used for business.

3. Deduct Business Expenses

Expense CategoryCommon Deductible ItemsStrategic Note
InsuranceMalpractice, Health premiums, BOE DisabilityHealth premiums are "Above the Line" deductions.
Professional DevCME Travel, Medical Licenses, Board FeesKeep travel logs; "lavish" meals not deductible.
Office/EquipComputers, Stethoscopes, Scrubs, Home OfficeHome office must be "exclusive use" area.
RetirementSolo 401(k), SEP IRA, Defined Benefit PlanDefined Benefit plans can shelter $100k+.

Self-employed physicians can deduct a wide range of business-related expenses, including:

  • Medical Supplies and Equipment: Costs for medical tools, equipment, and supplies used in your practice.
  • Office Supplies: Expenses for items like paper, pens, and office furniture.
  • Professional Services: Fees paid to accountants, lawyers, and consultants.
  • Continuing Education: Costs for seminars, conferences, and courses that maintain or improve your skills.
  • Insurance Premiums: Premiums for malpractice, health, disability (only policies that cover your business overhead expenses), and business liability insurance.
  • Marketing and Advertising: Expenses for promoting your practice, including website development, online advertising, and printed materials.

4. Health Insurance Premium Deduction

Self-employed physicians can deduct 100% of health insurance premiums paid for themselves, their spouses, and dependents. This deduction is available even if you do not itemize deductions. It directly reduces your adjusted gross income, providing significant tax savings.

5. Retirement Plan Contributions

Contributing to a retirement plan not only secures your financial future but also offers immediate tax benefits. Self-employed physicians have several options, including:

  • SEP IRA: Allows contributions of up to 25% of your net earnings, with a maximum contribution limit of $66,000 for 2024.
  • Solo 401(k): Provides the opportunity to contribute both as an employer and an employee. The employee contribution limit is $22,500, plus an additional $7,500 for those 50 and older. Total contributions (employee + employer) can reach up to $66,000, or $73,500 if you’re 50 or older.
  • SIMPLE IRA: Allows contributions of up to $15,500, with a $3,500 catch-up contribution for those aged 50 and over.

6. Travel and Meals

If you travel for conferences, continuing education, or other business purposes, you can deduct related expenses. This includes airfare, hotel stays, transportation, and meals. For meals, you can generally deduct 50% of the cost. Ensure you keep detailed records and receipts to substantiate these deductions.

7. Vehicle Expenses

If you use your vehicle for business purposes, you can deduct related expenses. You can choose between the standard mileage rate, which is 65.5 cents per mile for 2024, or the actual expense method, which includes costs for gas, repairs, insurance, and depreciation. Keeping a detailed mileage log is crucial for this deduction.

8. Qualified Business Income Deduction

The Qualified Business Income (QBI) deduction allows eligible self-employed individuals to deduct up to 20% of their qualified business income. However, this deduction is subject to income thresholds and phase-outs. For 2024, the threshold for single filers is $182,100 and $364,200 for married couples filing jointly. Above these thresholds, the deduction may be limited or phased out.

9. Continuing Education and Professional Fees

As a physician, staying current with medical advancements and maintaining your professional credentials are vital. Costs associated with continuing education, such as tuition, books, and travel, are deductible. Additionally, you can deduct professional fees for memberships in medical associations, licensing fees, and subscriptions to professional journals.

10. Depreciation of Business Assets

If you purchase significant assets for your practice, such as medical equipment (common for Dentists and Surgeons you can depreciate the cost over several years. The IRS allows different methods of depreciation, including the Section 179 deduction, which lets you deduct the full cost of qualifying assets in the year they are placed in service, up to a limit of $1,160,000 for 2024.

11. The "Hidden" Credit: Disabled Access Credit

Many practice owners overlook the Disabled Access Credit (Form 8826). If you are a small business (gross receipts under $1M or fewer than 30 employees), you can claim a tax credit of up to $5,000 per year for expenses related to making your practice accessible to patients with disabilities (e.g., ADA-compliant websites, ramps, or specialized equipment). Unlike a deduction, this is a dollar-for-dollar reduction of your tax bill.

⚖️ Strategic Insight: The S-Corp Election

Many self-employed physicians structure their practice as an LLC but elect to be taxed as an S-Corporation.

Why? It allows you to split your earnings into "Salary" (subject to 15.3% employment tax) and "Distributions" (exempt from employment tax). For a physician earning $300,000+, this single strategy can save $10,000+ annually in taxes. Consult your CPA to see if this fits your situation.

Conclusion

Navigating the complexities of self-employment taxes requires careful planning and diligent record-keeping. By taking advantage of available deductions and credits, self-employed physicians can significantly reduce their tax burden and enhance their financial health. Consider working with a tax professional who understands the unique needs of medical professionals to ensure you are maximizing your tax savings and staying compliant with tax laws. Implementing these strategies will allow you to focus more on providing excellent care to your patients while maintaining a robust financial foundation.

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CategoriesTaxes & Estate Planning Tagsdeductions,  estate planning,  tax tips

Content reviewed for accuracy as of January 2026

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